The ask
Users need a tool to visualize the complex network of molecular reactions occurring within biological organisms or cellular structures. This would help in understanding biochemical pathways and predicting molecular behavior. The software should represent molecules as nodes in a graph. Users must be able to select specific molecules and see how they interact. The visualization should highlight potential reaction edges and display any resulting byproducts, distinguishing them with different visual cues. It would be valuable to dynamically select multiple molecules and observe their potential reactions when in proximity. The system should complete a graph based on these selected molecules, showing all possible interactions. An animation feature for sequences of reactions would also be beneficial. Such a tool would significantly aid in scientific research, specifically in identifying complete reaction pathways within cells. This capability is critical for advancing research into potential medical treatments and cures.
Flamas collected this from a public request on Stack Exchange (softwarerecs), on Sep 28, 2026. Read the original. Nobody has been emailed about it, and the count above is only the people who have said they want it here.
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